OBO Foundry dashboard analysis¶

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/tmp/ipykernel_549/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    4
unknown           2
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 4 16123.000000 32142.965153 0.0 468.0 3612.0 7415.25 81411.0
SubClassOf 4 3488.833333 6642.474672 0.0 155.5 1137.5 1686.75 16960.0
Declaration 4 3409.833333 6687.264147 0.0 121.5 858.5 1624.75 16986.0
SubObjectPropertyOf 3 31.166667 45.652674 0.0 0.0 3.5 69.25 90.0
ObjectPropertyRange 3 23.500000 35.472525 0.0 0.0 5.0 35.50 87.0
ObjectPropertyDomain 3 25.666667 38.045587 0.0 0.0 5.0 42.25 91.0
FunctionalObjectProperty 2 1.666667 2.658320 0.0 0.0 0.0 3.00 6.0
TransitiveObjectProperty 2 2.666667 4.179314 0.0 0.0 0.0 5.25 9.0
SymmetricObjectProperty 2 1.166667 2.401388 0.0 0.0 0.0 0.75 6.0
SubAnnotationPropertyOf 2 3.333333 7.685484 0.0 0.0 0.0 0.75 19.0
IrrefexiveObjectProperty 2 0.833333 1.602082 0.0 0.0 0.0 0.75 4.0
InverseObjectProperties 2 10.000000 15.697133 0.0 0.0 0.0 19.50 34.0
EquivalentObjectProperties 2 3.333333 6.801961 0.0 0.0 0.0 2.25 17.0
EquivalentClasses 2 4.333333 8.041559 0.0 0.0 0.0 4.50 20.0
DisjointClasses 2 11.166667 18.115371 0.0 0.0 0.0 18.75 42.0
DataPropertyRange 2 4.166667 9.724539 0.0 0.0 0.0 0.75 24.0
ClassAssertion 2 3.333333 7.685484 0.0 0.0 0.0 0.75 19.0
FunctionalDataProperty 1 1.000000 2.449490 0.0 0.0 0.0 0.00 6.0
AnnotationPropertyDomain 1 0.166667 0.408248 0.0 0.0 0.0 0.00 1.0
ObjectPropertyAssertion 1 0.333333 0.816497 0.0 0.0 0.0 0.00 2.0
DifferentIndividuals 1 0.333333 0.816497 0.0 0.0 0.0 0.00 2.0
SubDataPropertyOf 1 1.833333 4.490731 0.0 0.0 0.0 0.00 11.0
DataPropertyDomain 1 1.833333 4.490731 0.0 0.0 0.0 0.00 11.0
SubPropertyChainOf 1 2.500000 6.123724 0.0 0.0 0.0 0.00 15.0
AnnotationPropertyRangeOf 1 0.500000 1.224745 0.0 0.0 0.0 0.00 3.0
AsymmetricObjectProperty 1 1.000000 2.449490 0.0 0.0 0.0 0.00 6.0
InverseFunctionalObjectProperty 1 0.333333 0.816497 0.0 0.0 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 4 10388.666667 19960.795752 0.0 432.5 3220.5 4930.75 50887.0
ObjectAllValuesFrom 3 7.666667 12.816656 0.0 0.0 3.0 6.75 33.0
ObjectSomeValuesFrom 3 149.333333 260.085883 0.0 0.0 38.0 135.25 665.0
ObjectUnionOf 3 8.833333 16.618263 0.0 0.0 1.0 7.25 42.0
DataSomeValuesFrom 2 4.500000 10.540398 0.0 0.0 0.0 0.75 26.0
ObjectComplementOf 2 5.666667 12.027746 0.0 0.0 0.0 3.00 30.0
ObjectExactCardinality 2 0.333333 0.516398 0.0 0.0 0.0 0.75 1.0
ObjectIntersectionOf 2 7.666667 12.027746 0.0 0.0 0.0 15.00 26.0
ObjectMinCardinality 2 1.166667 2.401388 0.0 0.0 0.0 0.75 6.0
DataExactCardinality 1 1.000000 2.449490 0.0 0.0 0.0 0.00 6.0
DataMinCardinality 1 0.166667 0.408248 0.0 0.0 0.0 0.00 1.0
ObjectMaxCardinality 1 0.166667 0.408248 0.0 0.0 0.0 0.00 1.0
ObjectOneOf 1 0.500000 1.224745 0.0 0.0 0.0 0.00 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
4 t4fs 0.419 0.838 0.0
5 vbo 0.411 0.822 0.0
1 mcro 0.386 0.771 0.0
2 ngbo 0.363 0.727 0.0
0 bpdo 0.000 0.000 0.0
3 scho 0.000 0.000 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 6.0 0.263167 0.204796 0.0 0.09075 0.3745 0.40475 0.419
score_dash 6.0 0.526333 0.409570 0.0 0.18175 0.7490 0.80925 0.838
score_impact 6.0 0.000000 0.000000 0.0 0.00000 0.0000 0.00000 0.000

OBO dependency graph